MOSAIK: A hash-based algorithm for accurate next-generation sequencing read mapping
Wan-Ping Lee (1), Michael Stromberg (1 and 2), Alistair Ward (1), Chip Stewart (1 and 3), Erik Garrison (1), Gabor T. Marth (1) ((1) Department of Biology, Boston College, Chestnut Hill, MA, (2) Illumina, Inc., San Diego, CA, (3) Broad Institute of Harvard and Massachusetts Institute of Technology, Cambridge, MA)
(Submitted on 4 Sep 2013)

This paper presents an accurate short-read mapper for next-generation sequencing data which is widely used in the 1000 Genomes Project, and human clinical and other species genome studies.